
Introduction to molecular docking shows how a structure-based approach predicts preferred orientation between two molecules to form a stable complex, using MOE and Amoy software, protein preparation, and energy minimization.
Identify a desirable viral protein to inhibit and search for its crystal structure or sequence. Download the protein sequence and align it for docking.
Search for a drug ligand, view its activities and properties such as molecular formula, molecular weight, and canonical SMILES, to prepare a ligand for inhibiting SARS coronavirus protein docking.
Install MOE software to support drug design and molecular docking using computational tools. Explore setup steps and essential MOE features for modeling and docking tasks.
Learn how to prepare a protein for docking using computational tools, including obtaining PDB files, analyzing the protein sequence, identifying active sites, and saving the prepared structure.
Learn to prepare ligands for docking by uploading molecules, assigning charges, optimizing geometry, and saving results in a dedicated database using computational tools.
Learn to dock a protein and ligand by uploading prepared protein, running docking, and saving results; identify the most negative energy at the active side as the best drug agent.
Explore how to analyze docking results and visualize 2d interactions of molecules using computational tools, including browsing files, viewing interaction pictures, and applying selections for multiple molecules at binding sites.
Export 2D and 3D molecule interactions as images, choose formats with transparent backgrounds, and save them for research articles, then analyze 3D interactions by coloring to highlight binding sites.
In the filed molecular orientation modeling, Molecular Docking the perfect binding of two molecules, like prediction of ligand binding on the active size of the protein. On the basic knowledge of computer you learn ligand based Computer Aided Drug design (CADD) approach involves the analysis of ligands known to interact with a target of interest. One such course is particularly designed to maintain knowledge at the beginner level of computer Drug Discovery applications for science students. Most easily Docking Software than the AutoDock. This short course will help students get a good start in becoming proficient in the field of docking and drug development simulation studies before they become familiar with the use of MOE software and dive into lab validation studies. A real problem of today's world was taken as an example in this course and a drug agent called lutein which is present in papaya for quad "protein resistance and possibly drug agent capabilities. Was tested.
By the use of this software, we have performed the molecular docking studies of various naturally occurring compounds, anti virus, anti fungals, anti-nematodes and anti-protozoal drug by the pharmaceutical industry.
Throughout this course, you will discover Molecular Docking from scratch, including
Install Molecular Docking Environment (MOE)
Retire Ligand from Bioinformatics Database
Get Protein sequence form Protein Data Bank (PDB)
Performed Molecular Docking
2D & 3D Molecules Interaction