
Transcription: house-keeping genes and cell-function specific genes
At the end of the lecture, there are discussion points. Please write your own logical reasons why you choose those genes express in a certain way.
Explore how translation converts nucleotides to amino acids via a triplet code, and how DNA mutations—point, frameshift, missense, nonsense—alter proteins, including silent changes, premature stops, and truncated forms.
Please decide a disease for you to research. It should be a complex disease (caused by multiple genes and environmental effects or unknown). Make a presentation slide on that disease following the guidelines shown here.
Explore the UCSC genome browser to locate EGFR on chromosome 7 and view exons, introns, and the assembly’s coding sequence.
Explore how identical DNA yields different cell types through RNA expression and transcription, and learn how microarrays measure thousands of gene expressions via probe hybridization and fluorescent signals.
Please use the prompts to answer them and understand the concepts of microarray.
Learn to use the gene expression omnibus to locate microarray data for disease research, identify human datasets with clear two-group comparisons, and compare microarray with sequencing-based expression profiling.
Learn to compare gene expression between groups using microarray data, define up and down regulation, and use GEO2R to analyze Parkinson's datasets while handling outliers and assessing statistical power.
Explore how to assess gene expression differences using the t-test and p-value, including null hypothesis, means, standard deviation, and sample size to compare two groups.
Explore gene ontology to classify genes by go process, select top or regulated genes via p-value and log fold change, and compare biological process, molecular function, and cellular component.
Explore GeneCards to look up a gene, view aliases, expression patterns, disorders, pathways, and gene function, and connect findings to disease context.
Explore Guidice, a high school club that democratizes medical research through genetics projects, fundraising, and public outreach, while preparing members to present at conferences and start new clubs.
This course is designed to facilitate transcriptome research (analyze gene expression data) for people with high school biology-level knowledge. It covers overall transcriptome research that scientists use with application to a disease of focus.
The course covers 1) precision medicine and current biotechnology advances, 2) their implications for our day-to-day health, 3) roles of genes in health and diseases, and 4) the complex influence of daily behaviors on gene functions.
This course emphasizes the impact of real-life environmental factors on and ways in which research can solve certain kinds of problems.
It also covers biology baasics and statistical concepts helpful in doing transciptome research.
Please note that the current version consists of combined lectures from the summer camps we run yearly. This is so that prospective students who want to join our miRcore volunteer programs this school year can take it and join in a timely manner. While the audiences in the lectures are summer campers, the curriculum was prepared as an online course. Please understand some discrepancies in dates and groups in the lectures.